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WP3: Spatial modelling

Understanding where species live today—and how they may shift tomorrow—is central to protecting the Baltic Sea. 


Work Package 3 (WP3) is developing advanced spatial models that bring together environmental data, species observations, and human pressures to create a powerful tool for marine management.


This work is led by Roland Pesch at Jade University, with contributions from HELCOM Secretariat, SLU, SYKE, UTARTU, and SGU.

Roland Pesch

WP Lead for WP3

Building the foundations for modelling

In the first phase, researchers are assembling high-resolution environmental datasets from remote sensing and 3D modelling, including satellite imagery.

These underpin distribution models for benthic invertebrates, plants, fish, and marine mammals, as well as human-induced pressures such as fishing, dredging, and shipping.

  • An initial dataset of 148 predictor variables has been refined to 49 pan-Baltic layers.
  • Downscaling has achieved a spatial resolution of 250 m. 
  • Ensemble modelling techniques combine multiple species distribution models for more robust results.  


Hundreds of models have already been run:

  • Benthic invertebrates → 399 models
  • Macrophytes → 185 models
  • Fish → 72 models


And these are being evaluated using global performance measures and mapped with probability, presence, and uncertainty. 

Overview of environmental predictor factors

Looking ahead: challenges & opportunities

The second phase pushes into the future. By applying environmental scenarios, the team projects how species and habitats may shift under climate change and other human pressures. 


This forward-looking approach highlights both current and future biodiversity hotspots, as well as areas that show ecological resilience—insights that will directly feed into conservation prioritization in our ecosystem work in Work Package 4 and governance work in Work Package 6.


The path forward is not without obstacles. Species observations vary in how they’re collected, leaving gaps across space and time. Predictor datasets can fall short of the desired resolution, and national impact assessments differ in their scope. 


But these hurdles have sparked innovation. The team has developed new downscaling methods, strengthened regional collaboration, and tapped into fresh data sources—like eBird for seabird modelling or prototype tools for detecting recreational boating—turning challenges into opportunities for richer, more accurate models.

Example of a distribution model for the European bullhead (cottus gobio)

What comes next?

By the end of 2025, the final round of modelling will be complete, bringing together biotope analyses through cluster methods, new maps showing how species and habitats are likely to be distributed in the future, and a clear picture of biodiversity hotspots across the Baltic. 


All of this will be fed into regional biodiversity databases and conservation planning tools, giving decision-makers a strong, science-based foundation for protecting the sea today and preparing for tomorrow. 

Deliverables

Overview of environmental predictor factors to be included in models

Updated automated tool for illustrating spatial distribution of activities, pressures & impacts

Overview of environmental predictor factors to be included in models

Overview of environmental predictor factors

Spatial map layers on abiotic ecosystem components in the Baltic Sea

Updated automated tool for illustrating spatial distribution of activities, pressures & impacts

Overview of environmental predictor factors to be included in models

Spatial map layers on abiotic ecosystem components

Environmental predictor layers modelling code

Updated automated tool for illustrating spatial distribution of activities, pressures & impacts

Updated automated tool for illustrating spatial distribution of activities, pressures & impacts

Coming in November 2025

Updated automated tool for illustrating spatial distribution of activities, pressures & impacts

Updated automated tool for illustrating spatial distribution of activities, pressures & impacts

Updated automated tool for illustrating spatial distribution of activities, pressures & impacts

Coming in May 2026

Manual for tool for spatial pressures & impacts of human activities

Manual for tool for spatial pressures & impacts of human activities

Manual for tool for spatial pressures & impacts of human activities


Coming in August 2026

Habitats & species distribution modelling code

Manual for tool for spatial pressures & impacts of human activities

Manual for tool for spatial pressures & impacts of human activities


Coming in August 2026

Spatial map layers on biotic ecosystem components in the Baltic Sea

Manual for tool for spatial pressures & impacts of human activities

Spatial map layers on biotic ecosystem components in the Baltic Sea


Coming in August 2026

Spatial map layers on human activities in the Baltic Sea

Manual for tool for spatial pressures & impacts of human activities

Spatial map layers on biotic ecosystem components in the Baltic Sea


Coming in August 2026

Estimates for future abiotic conditions under climate change

Estimates for future distribution of species & habitats under climate change

Estimates for future distribution of species & habitats under climate change

Coming in August 2026

Estimates for future distribution of species & habitats under climate change

Estimates for future distribution of species & habitats under climate change

Estimates for future distribution of species & habitats under climate change

Coming in August 2026

Spatial information on possible biodiversity hotspots (present & future)

Estimates for future distribution of species & habitats under climate change

Spatial information on possible biodiversity hotspots (present & future)

Coming in August 2026

Report on potential biodiversity hotspots in the Baltic Sea

Estimates for future distribution of species & habitats under climate change

Spatial information on possible biodiversity hotspots (present & future)

Coming in August 2026

Biodiversity hotspot modelling code

Biodiversity hotspot modelling code

Biodiversity hotspot modelling code

Coming in August 2026

Future conditions modelling code

Biodiversity hotspot modelling code

Biodiversity hotspot modelling code

Coming in August 2026


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